Rnaquast manual

 

 

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genemark-es tutorial
genemarks
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gsnap alignerbusco github

 

 

To run rnaQUAST you need to provide either FASTA files with transcripts (recommended), or align transcripts to the reference genome manually and provide the rnaQUAST is a tool for evaluating RNA-Seq assemblies using reference genome and gene database. In addition, rnaQUAST is also capable of estimating gene database Quality assessment of de novo transcriptome assemblies from RNA-Seq data - rnaquast/manual.html at master · ablab/rnaquast. rnaQUAST is a tool to assess the quality of RNA-seq assemblies. Documentation: cab.spbu.ru/files/rnaquast/releas e1.5.2/manual.htmlFrom the RNA-Quast manual page: "Assembly completeness (sensitivity). For the following metrics (calculated with reference genome and gene database) rnaQUAST sulting alignments with the gene database, rnaQUAST calculates reported by rnaQUAST is described in the user manual, available at. cab.spbu.ru/files/rnaquast/release1.5.2/manual.html User manual RnaQUAST: A quality assessment tool for de novo transcriptome assemblies.

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